I suggest adding an option to select the directories to include / exclude from publication by publication profile.
This would make it possible, as for ASP.Net, to publish a different web.config for each profile with its web.config.
Thank you for the suggestion. This would be good feature. Currently, we just publish what's in the project and has Publishable property set to true (Default).
In future version we are planing more customizable publish process that would allow feature you're suggesting.
We'll keep you posted.
@MiloslavBeno the problem is still, that the "publishable" property is read-only.